Monday, September 7, 2015

More Than Meets the Eye

In the last post we discussed the potential for stem cells to be pluripotent, and which steps need to be taken to test for their pluripotency. In this post, we will explain to Alex how his pluripotent stem cells are transformed into neural stem cells.

Alex: We should talk more often. It is very interesting to learn about the science and potential implications for new therapies. I am excited to learn about the transformation of my stem cells into nerve cells. Tell me, what are neural stem cells?

Birgitt: Neural stem cells are the precursor cells of the brain. They can differentiate into multiple cell types such as nerve cells and cells that support neurons which are called glia cells. They are the stem cells of the central nervous system. Even in the adult brain, we can find neural stem cells. Recent studies have shown that physical exercise helps with the regeneration of neural stem cells. So, keep moving!

Alex: I am running and keep moving, that's my motto. It helps a lot with my Parkinson's. What is the concept behind the transformation into neural stem cells?

Birgitt: To understand cell differentiation one must understand the concept of the three germ layer. A germ layer is a group of cells that interacts with one another to create organs and tissues. Humans have three germ layers: the inner layer (endoderm), the middle layer (mesoderm), and the outer layer (ectoderm).  Each one of these layers is responsible for creating different tissues of the human body.  Nerve cells are derived from the outer layer. In the culture of your induced pluripotent stem cells, we promote the preferential growth of the  outer layer cells and suppress the mesoderm and endoderm layers using specific small molecules and proteins in the cell culture media.

Alex: Fascinating, there is indeed more than meets the eye in this process.

Birgitt: Well, the process to transform stem cell into neurons or neural precursor cells has been a tedious and lengthy procedure in the past. However, newer protocols allow us to circumvent several difficulties, and has made the transformation much faster. One procedure in particular has made it possible for pluripotent stem cells to be turned into neural stem cells in only seven to ten days. You can see your stem cells at day 2 and day 6 during the neural induction in the next two images.
Alex's stem cells at day 2 of neural induction
Alex's stem cells at day 6 of neural induction


Alex: Interesting. On the next two images below, my cells look completely different and I can see individual cells, almost like my skin cells.

Birgitt: Exactly, after seven days and one enzymatic treatment to divide the cells, the cells grow in a single layer. They look similar to skin cells, but have a rounder body and a few small processes. The images below are in two different magnifications, the first one is an overview and then a close-up. Looking good!
Alex's neural stem cells have formed
Alex's neural stem cells at higher magnification

Alex: And after that? These are not the dopaminergic neurons that are dying in my brain. I assume there is another step or steps?

Birgitt: Right on, the neural stem cells can be further differentiated into different types of neurons or glia through several different processes. Many research labs develop protocols to make all kinds of different cells of the brain, such as cortical neurons, inhibitory GABAergic neurons, dopaminergic neurons, Purkinje cells, and motor neurons as well as glia cells like astrocytes or oligodendrocytes. The methods for differentiating all these types of neurons can require extended periods of time (up to several months).

Alex: How long does it take to make dopaminergic neurons?
  
Birgitt: It takes about 4-8 weeks to have fully mature dopaminergic neurons. A long way to go and it needs passion, endurance, and commitment, just as running a marathon. Will talk about them in the next blogs.
  
Alex: Thanks so much, as always, fascinating and it gives me hope that this research will -some day, hopefully soon- change the lives of people with Parkinson's disease. 





Monday, August 10, 2015

Movie Monday Episode 5 "Alex Strikes Back"

In this week's video Alex discusses his future plans for raising awareness for Parkinson's. 


Music: "Broken" by Alialujah Choir

Monday, July 27, 2015

Movie Monday Episode 3 "Revenge of Alex"


In this week's video Alex discusses how he finds motivation to keep advocating for research for Parkinson's Disease. 



Music: "People Like You" by Weinland

Movie Monday Episode 4 "A New Hope"

In this week's video Alex explains how he raises awareness for Parkinson's.


Music: "Solo Acoustic" by Jason Shaw

Monday, July 20, 2015

Movie Monday Episode 2 "Stem Cell Wars"

In this week's video Alex discusses how Parkinson's has affected his professional and personal life.


Music: "Sunken Eyes" by Weinland

Monday, July 13, 2015

New! Movie Mondays with Alex: Episode 1 "Alex's Menace"

We've gotten a lot of questions about Alex and how Parkinson's Disease has affected his life. To answer some of these questions we will be releasing weekly clips from an interview we conducted with Alex in 2013. The interview answers many of the same questions our fans have asked and will hopefully be insightful, informative, and interesting. In this first clip Alex discusses when he discovered his first symptoms of Parkinson's Disease  Enjoy.




Music: "Cold Weather" by Alialujah Choir

Thursday, July 2, 2015

Yes, they can – testing Alex’s cells for pluripotency



In the last blog we gave an overview on how to characterize iPS cells. Today, we dive in and explain how we test the cells for pluripotency, the potential to turn into different cell types of the human body.
 
Alex: Hi, it's been a while, but it's summer and I heard Lauren has accepted a new position!

Birgitt: Yes, we'll miss Lauren and we wish her the best of luck for her future.

Alex: So what's next?

Birgitt: I'll explain how we test your cells to see if they have the potential to show "yes we can" "Change"  into other cells. To test proteins and markers in the cell you need to visualize them. This can be done with a method called immunostaining. Immunostaining is an antibody-based method that detects specific proteins on the surface or inside of the cells. The picture below is an example of how we can immunostain the cells. We use an antibody specific for a certain marker on the cell, called epitope. Once this antibody binds to the epitope we then incubate with a fluorescently labeled antibody that binds to the first antibody. We can then visualize this fluorescence with a fluorescent microscope and take the colorful images you will see in the next few blogs. 


More info about immunostaining here

Alex: Hmm sounds a lot like 2008. I posted some pretty fluorescence pictures on my Facebook page that you shared with me in the past. I am looking forward to understanding more about these immunostaining techniques.

Birgitt: We used three different antibodies to detect whether or not your stem cells are pluripotent. The three markers we used were OCT4, SOX2, and SSEA4, these are proteins that are expressed in pluripotent cells and therefore called pluripotency markers. These are abbreviations for protein names octamer-binding transcription factor 4 (OCT4), sex determining region Y-box 2 (SOX2), and stage-specific embryonic 4 (SSEA4). Since these protein names are so complicated we usually only use the abbreviations.
See the results in the three images below.  The blue color is the nuclear stain or counterstain which shows where the nucleus of the cell is located. The green fluorescence corresponds one of the pluripotency markers.


iPS colony stained with SSEA-4 antibody


iPS colony stained with OCT4 antibody


iPS colony stained with SOX2 antibody


Alex: I hope we can talk about this more next time and I am also very excited to come out to San Francisco for the Festival of Genomics on November 5th, 2015 to chat with you on stage about my Parkinson’s disease, stem cells,  and more (http://www.festivalofgenomicscalifornia.com/).

Birgitt: I am thrilled to have the opportunity to talk with you on stage, can't wait! And maybe the topic of pluripotency will be reelected in the next post.